Issues

• throw error when several bam files match possibleTumorSampleNamePrefixes set

  DKFZ-ODCF/COWorkflowsBasePlugin#29 · Filter by author GWarsow opened on Feb 19, 2019

• searchMergedBamsWithSeparator must be set explicitely when using exact sample name match for sample from file extraction.

  bug
  DKFZ-ODCF/COWorkflowsBasePlugin#27 · Filter by author dankwart-de opened on Jan 29, 2019
  1

• Hint for reworking the COMetadataAccessor

  DKFZ-ODCF/COWorkflowsBasePlugin#24 · Filter by author dankwart-de opened on Dec 4, 2018

• Create isControlWorkflow / isNoControlWorkflow in a new tool script

  enhancement
  DKFZ-ODCF/COWorkflowsBasePlugin#17 · Filter by author dankwart-de opened on May 28, 2018

• Move all plugins to depend on this version of the COWorkflows plugin

  DKFZ-ODCF/COWorkflowsBasePlugin#10 · Filter by author vinjana opened on Dec 20, 2017
  1

• Create a base workflow (or wrapper) which allows to use the cohort loading code in an easy way.

  enhancement
  DKFZ-ODCF/COWorkflowsBasePlugin#8 · Filter by author dankwart-de opened on Dec 11, 2017

• Create a fastq base workflow for single and paired end processing

  enhancement
  DKFZ-ODCF/COWorkflowsBasePlugin#7 · Filter by author dankwart-de opened on Dec 11, 2017
  1

• Pull Fastq loading code to this plugin

  enhancement
  DKFZ-ODCF/COWorkflowsBasePlugin#6 · Filter by author dankwart-de opened on Dec 11, 2017

• If the bam samples are passed via sample_list, also override possibleControl/TumorSampleName...

  enhancement
  DKFZ-ODCF/COWorkflowsBasePlugin#5 · Filter by author dankwart-de opened on Nov 7, 2017
  1

• If Bam files cannot be found, make a better log message

  enhancement
  DKFZ-ODCF/COWorkflowsBasePlugin#3 · Filter by author dankwart-de opened on Nov 6, 2017
  1