Issues

implemenation optimization: boyer-moore-harspool
crmackay/sblade#36 · opened on Nov 4, 2016
flamegraph and optimization
crmackay/sblade#35 · opened on Oct 30, 2016 · 0.0.2
add fastqio
crmackay/sblade#34 · opened on Oct 30, 2016 · 0.0.1
data for paper:
crmackay/sblade#33 · opened on Oct 30, 2016 · 0.0.1
add pthreads, concurrency
crmackay/sblade#32 · opened on Oct 30, 2016 · 0.0.1
performance testing
crmackay/sblade#31 · opened on Jun 27, 2016
add SIMD support
crmackay/sblade#29 · opened on Feb 10, 2016
add four-russians speed up
crmackay/sblade#28 · opened on Nov 9, 2015
fix alignment algorithm
crmackay/sblade#27 · opened on Nov 9, 2015 · 0.0.1
add to homebrew
crmackay/sblade#26 · opened on Oct 21, 2015
add automated testing and deployment
crmackay/sblade#25 · opened on Oct 21, 2015
1
fill and clean up unit tests
crmackay/sblade#24 · opened on Oct 21, 2015
add deduplication support
crmackay/sblade#23 · opened on Oct 21, 2015
plan for optimizing memory management
crmackay/sblade#21 · opened on Jul 29, 2015
new semi-global alignment algorithm with incorporation of quality data
crmackay/sblade#20 · opened on Jul 2, 2015
1
optimize search algorithm
crmackay/sblade#17 · opened on Jun 29, 2015 · 0.0.1
stdin/stdout pipe support
crmackay/sblade#14 · opened on Jun 18, 2015
data collection: total reads processed?
crmackay/sblade#11 · opened on Jun 18, 2015
1
unit test: data collection
crmackay/sblade#10 · opened on Jun 18, 2015 · 0.0.1
add apriori probability calculation option
crmackay/sblade#8 · opened on Jun 11, 2015 · 0.0.3
draft paper
crmackay/sblade#6 · opened on Feb 18, 2015 · 0.0.1
submit for DOI
crmackay/sblade#5 · opened on Feb 18, 2015 · 0.0.3
add config file parsing
crmackay/sblade#4 · opened on Feb 18, 2015 · 0.0.3
add command line arguments
crmackay/sblade#3 · opened on Feb 18, 2015 · 0.0.1
Documentation
crmackay/sblade#1 · opened on Feb 18, 2015 · 0.0.2