From 256587b7e2ae0e24151da3f5dd59485ba90b930b Mon Sep 17 00:00:00 2001
From: Nancy Hansen <nhansen@mail.nih.gov>
Date: Tue, 14 Jul 2026 11:49:52 -0400
Subject: [PATCH] Changed uint32 loop variable to uint64 to prevent overflow
 for very long scaffolds

---
 src/datastructures/arrays-v1.H | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/datastructures/arrays-v1.H b/src/datastructures/arrays-v1.H
index f89a9c3..9d1ec82 100644
--- a/src/datastructures/arrays-v1.H
+++ b/src/datastructures/arrays-v1.H
@@ -191,7 +191,7 @@ setArraySize(TT*& array, uint64 arrayLen, LL &arrayMax, uint64 newMax, _raAct op
       (arrayLen > 0) &&
       ((op == _raAct::copyData) ||
        (op == _raAct::copyDataClearNew)))
-    for (uint32 ii=0; ii<arrayLen; ii++)
+    for (uint64 ii=0; ii<arrayLen; ii++)
       copy[ii] = array[ii];
 
   delete [] array;
@@ -199,7 +199,7 @@ setArraySize(TT*& array, uint64 arrayLen, LL &arrayMax, uint64 newMax, _raAct op
 
   if ((op == _raAct::clearNew) ||
       (op == _raAct::copyDataClearNew))
-    for (uint32 ii=arrayLen; ii<newMax; ii++)
+    for (uint64 ii=arrayLen; ii<newMax; ii++)
       copy[ii] = TT();
 
   if (update)