Repository navigation
Expand file tree
/
Copy pathmain.py
More file actions
70 lines (53 loc) · 2.15 KB
/
Copy pathmain.py
File metadata and controls
70 lines (53 loc) · 2.15 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
from graph_construction import CustomDataset
from model import InteractionNetwork
from traning import train_model
from torch.utils.data import random_split
import random
from pathlib import Path
import tarfile
import torch
# from torch.utils.data import Dataset
# from torch_geometric.data import Data
from torch_geometric.data import DataLoader
import sys
def main():
# Dataset created from the tar files
print("Dataset creating from the tar files")
dataset = CustomDataset("tar_data")
print(f"Number of graphs: {len(dataset)}")
# Iterate through the dataset and print the first graph
for i in range(len(dataset)):
print(f"Graph {i+1}:")
print((dataset[i]))
break
# Shuffle dataset
random.shuffle(dataset.graphs)
# Split dataset into train and eval
train_size = int(0.8 * len(dataset))
eval_size = len(dataset) - train_size
train_dataset, eval_dataset = random_split(dataset, [train_size, eval_size])
# Create data loaders
train_loader = DataLoader(train_dataset, batch_size=32, shuffle=True)
eval_loader = DataLoader(eval_dataset, batch_size=32)
# Create model
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
model = InteractionNetwork(10).to(device)
arg1 = sys.argv[1]
if arg1 == "balanced":
print("Using balanced loss function")
criterion = torch.nn.BCEWithLogitsLoss()
else:
print("Using unbalanced loss function")
# Train with class-balanced binary cross-entropy loss
n_positives = sum([dataset[i].y.eq(1).sum().item()
for i in range(len(dataset))])
n_negatives = sum([dataset[i].y.eq(0).sum().item()
for i in range(len(dataset))])
pos_weight = torch.tensor(n_negatives / n_positives, dtype=torch.float32)
bce_loss_class_balanced = torch.nn.BCEWithLogitsLoss(pos_weight=pos_weight)
criterion = bce_loss_class_balanced
optimizer = torch.optim.Adam(model.parameters(), lr=0.001)
train_model(model, train_loader, eval_loader,
bce_loss_class_balanced, optimizer, 50)
if __name__ == "__main__":
main()