feat: migrate multiOmicDataSet object to MOObject - #1
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Add development-version NEWS entry for PR #1 covering class, IO, and test additions. _AI assistance: GPT-5.3-Codex_
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Welcome to Codecov 🎉Once you merge this PR into your default branch, you're all set! Codecov will compare coverage reports and display results in all future pull requests. Thanks for integrating Codecov - We've got you covered ☂️ |
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Changes
This PR migrates the
multiOmicDataSetobject class into MOObject so downstream packages can depend on a lightweight package without requiring MOSuite.MOObject is focused on class/IO responsibilities, while analysis/visualization behavior should remain in MOSuite.
Included in this PR:
R/multiOmicDataSet.R:multiOmicDataSetS7 class definitionextract_countsgeneric + methodwrite_multiOmicDataSet_properties).github/plans/initial-plan.md.Issues
resolves CCBR/MOSuite#270
Generative AI Usage Statement
AI assistance was used to draft and migrate code/doc/test scaffolding, followed by manual review of all changes before submission.
multiOmicDataSetclass + object helpers into MOObject and keep package lightweightPR Checklist
(
Strikethroughany points that are not applicable.)NEWS.mdwith a short description of any user-facing changes and reference the PR number. Follow the style described in https://style.tidyverse.org/news.htmldevtools::check()locally and fix all notes, warnings, and errors.