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Update merge top feature functions to ignore the merged parquet #43

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Update merge top feature functions to ignore the merged parquet #43

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16 changes: 11 additions & 5 deletions R/merge_ml_results.R
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Original file line number Diff line number Diff line change
Expand Up @@ -174,7 +174,8 @@ buildTopFeatsPq <- function(
full.names = TRUE,
recursive = TRUE
)

files <- files[basename(files) != "all_top_features.parquet"]

if (length(files) == 0) {
stop(
"No files matching '_top_features.parquet' were found in: ",
Expand Down Expand Up @@ -489,7 +490,8 @@ buildTopFeatsPqYearCountry <- function(
top_feat_dir_path
) {
files <- list.files(top_feat_dir_path, pattern = "\\.parquet$", full.names = TRUE)

files <- files[!basename(files) %in% c("year_top_features.parquet", "country_top_features.parquet")]

# Read and combine
merged_df <- files |>
purrr::set_names() |>
Expand Down Expand Up @@ -540,7 +542,8 @@ buildTopFeatsPqLOODrug <- function(
top_feat_dir_path
) {
files <- list.files(top_feat_dir_path, pattern = "\\.parquet$", full.names = TRUE)

files <- files[!basename(files) %in% c("LOO_drug_top_features.parquet")]

# Read and combine
merged_df <- files |>
purrr::set_names() |> # keeps file names attached
Expand Down Expand Up @@ -572,6 +575,7 @@ buildTopFeatsPqMDR <- function(
top_feat_dir_path) {

files <- list.files(top_feat_dir_path, pattern = "\\.parquet$", full.names = TRUE)
files <- files[!basename(files) %in% c("MDR_top_features.parquet")]

# Read and combine
merged_df <- files|>
Expand Down Expand Up @@ -737,7 +741,8 @@ buildTopFeatsPqLOOCountry <- function(
top_feat_dir_path
) {
files <- list.files(top_feat_dir_path, pattern = "\\.parquet$", full.names = TRUE)

files <- files[files != file.path(top_feat_dir_path, "LOO_country_top_features.parquet")]

# Read and combine
merged_df <- files |>
purrr::set_names() |> # keeps file names attached
Expand Down Expand Up @@ -770,7 +775,8 @@ buildTopFeatsPqLOOYear <- function(
top_feat_dir_path
) {
files <- list.files(top_feat_dir_path, pattern = "\\.parquet$", full.names = TRUE)

files <- files[files != file.path(top_feat_dir_path, "LOO_year_top_features.parquet")]

# Read and combine
merged_df <- files |>
purrr::set_names() |> # keeps file names attached
Expand Down