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Plot coalescent distribution to the outgroup for introgressed and ingroup states

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SimulateDemography

Plot coalescent distribution to the outgroup for introgressed and ingroup states

Requirements

You will need numpy, matplotlib, msprime, tskit, demes, demesdraw and hmmix

Running the examples

In order to run examples from small paper:

python sim.py -demography=Demography_a -iterations=10000
python sim.py -demography=Demography_b -iterations=10000 -admixpop=outgroup
python sim.py -demography=Demography_c -iterations=10000
python sim.py -demography=Demography_d -iterations=10000
python sim.py -demography=Demography_e -iterations=10000 -outgroupsize=1
python sim.py -demography=Demography_f -iterations=10000 

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Plot coalescent distribution to the outgroup for introgressed and ingroup states

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