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Fix lint findings in the R chunks of r-config.qmd #1430

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dem-extra1 merged 1 commit into from
Nov 1, 2026
Merged

Fix lint findings in the R chunks of r-config.qmd #1430

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26 changes: 16 additions & 10 deletions chapters/r-config.qmd
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Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ Functions from these packages will be used throughout this document:
#| label: "packages"
#| message: false
library(conflicted) # check for conflicting function definitions
# library(printr) # inserts help-file output into markdown output
# printr is not loaded here: it inserts help-file output into markdown output
library(rmarkdown) # Convert R Markdown documents into a variety of formats.
library(pander) # format tables for markdown
library(ggplot2) # graphics
Expand All @@ -35,8 +35,11 @@ library(webshot2) # convert interactive content to static for pdf
library(forcats) # functions for categorical variables ("factors")
library(stringr) # functions for dealing with strings
library(lubridate) # functions for dealing with dates and times
library(broom) # Summarizes key information about statistical objects in tidy tibbles
library(broom.helpers) # Provides suite of functions to work with regression model 'broom::tidy()' tibbles
# Summarizes key information about statistical objects in tidy tibbles
library(broom)
# Provides suite of functions to work with regression model
# `broom::tidy()` tibbles
library(broom.helpers)
```

Here are some R settings I use in this document:
Expand All @@ -48,21 +51,24 @@ rm(list = ls()) # delete any data that's already loaded into R

conflicts_prefer(dplyr::filter)
ggplot2::theme_set(
ggplot2::theme_bw() +
# ggplot2::labs(col = "") +
ggplot2::theme_bw() +
# ggplot2::labs(col = "") +
ggplot2::theme(
legend.position = "bottom",
text = ggplot2::element_text(size = 12, family = "serif")))
text = ggplot2::element_text(size = 12, family = "serif")
)
)

knitr::opts_chunk$set(message = FALSE)
options('digits' = 6)
options(digits = 6)

panderOptions("big.mark", ",")
pander::panderOptions("table.emphasize.rownames", FALSE)
pander::panderOptions("table.split.table", Inf)
conflicts_prefer(dplyr::filter) # use the `filter()` function from dplyr() by default
legend_text_size = 9
run_graphs = TRUE
# use the `filter()` function from dplyr() by default
conflicts_prefer(dplyr::filter)
legend_text_size <- 9
run_graphs <- TRUE
```

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