TRON Bioinformatics
- 88 followers
- Mainz, Germany
- http://tron-mainz.de/
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tronflow-mutect2
tronflow-mutect2 PublicNextflow pipeline for Mutect2 somatic variant calling best practices
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covigator-ngs-pipeline
covigator-ngs-pipeline PublicA Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.
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splice2neo
splice2neo PublicR package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes
Repositories
- SpecHLA Public Forked from deepomicslab/SpecHLA
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
- snakemake-wrappers Public Forked from snakemake/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
- oblx Public
Reproducible generation of references and resources for next generation sequencing pipelines.
- snakemake-workflow-catalog Public Forked from snakemake/snakemake-workflow-catalog
A statically generated catalog of available Snakemake workflows
- k4neo Public
k4neo enables easy screening of target sequences against a sequence database generated from a set of defined control samples. This packages handles index generation and annotation of targets with information about expression in healthy and cancer tissue samples.
- test-datasets Public Forked from nf-core/test-datasets
Test data to be used for automated testing with the nf-core pipelines
- tronmake-kmer-pipeline Public
A Snakemake workflow to build and query large scale k-mer datastructures
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