This repository contains low-level function to support federated analysis, now mainly for Federated Genome Wide Association Study (GWAS) and Federated Survival Analysis.
To support functionalities from plink, we should compile source files and install executable binaries.
Execute scripts in scripts to compile external programs and install executables.
Automatic compilation and installation are recorded in .gitlab-ci.yml for CI and setup.py for packaging.
- [Federated GWAS Regression & Mechanism] sPLINK: a hybrid federated tool as a robust alternative to meta-analysis in genome-wide association studies
- [Federated SVD] Federated horizontally partitioned principal component analysis for biomedical applications
- [Federated Cox PH Regression] DC-COX: Data collaboration Cox proportional hazards model for privacy-preserving survival analysis on multiple parties