Bioinformatics pipelines in Sylvester Biostatistics and Bioinformatics Core Resource

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Pieline for processing and analyzing deep sequencing data

This repository includes pipelines for processing and analyzing different types of deep sequencing data

Name		Name	Last commit message	Last commit date
Chip-Seq		Chip-Seq
RNA-seq		RNA-seq
Bash_run_submit_job_4_sorted_bam.sh		Bash_run_submit_job_4_sorted_bam.sh
Bash_run_submit_job_4_sorted_bam_2.sh		Bash_run_submit_job_4_sorted_bam_2.sh
ConvertBed2Bw_12_22_2015_2.sh		ConvertBed2Bw_12_22_2015_2.sh
README.md		README.md
RunAlignment.sh		RunAlignment.sh
RunAlignment4SingleEnd.sh		RunAlignment4SingleEnd.sh
Run_DESeq2.R		Run_DESeq2.R
generate_tophat_commands.R		generate_tophat_commands.R
merge_tables.py		merge_tables.py

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