All pull requests

Pull requests

• Make image processing tests deterministic

  #668·AlokDubey25 opened Oct 20, 2026·7 tasks·

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• Fix CI model cache invalidation

  #660·aymuos15 opened Sep 7, 2026Contributor·

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• Register the pretrained 2D models

  #656·aymuos15 opened Aug 14, 2026Contributor·4/4·

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• Expose 2D/3D selection in the napari widgets

  #655·aymuos15 opened Aug 14, 2026Contributor·3/4·

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• Add 2D network training to the train CLI

  #654·aymuos15 opened Aug 14, 2026Contributor·2/4·

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• Support 2D cell candidate detection

  #653·aymuos15 opened Aug 14, 2026Contributor·1/4·

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• Curated tiff directories in yaml file should be relative to yaml file

  #634·matham opened Jun 28, 2026Contributor·4 of 7 tasks·

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• Expose augmentation params in napari and cli

  #632·matham opened Jun 22, 2026Contributor·5 of 7 tasks·

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• Show number of cells already curated

  #630·matham opened Jun 21, 2026Contributor·4 of 7 tasks·

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• Pass cell metadata through napari.

  #629·matham opened Jun 21, 2026Contributor·4 of 7 tasks·

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• Log the proportion of cells classified

  #628·matham opened Jun 21, 2026Contributor·3 of 7 tasks·

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• Share workers between epochs

  #627·matham opened Jun 21, 2026Contributor·3 of 7 tasks·

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• Add status label below progress bar

  #611·sGTetjn opened Mar 31, 2026·3 of 7 tasks·

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• fix: allow detection-only runs without background channel

  #610·NiShITa-code opened Mar 29, 2026·4 of 7 tasks·

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• Fix kernel to be symetric and properly spheroid

  #609·matham opened Mar 26, 2026Contributor·4 of 7 tasks·

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• Fix #605: make background_array optional when skip_classification=True

  #607·KpradeepKumar25 opened Mar 21, 2026·3 of 7 tasks·

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• Remove unused detection constants

  #604·Gautghadi-1605 opened Mar 14, 2026·1 of 4 tasks·

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• Refactor detection input validation into helper function

  #600·mani6409 opened Mar 10, 2026·

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• Add tests for download CLI to improve coverage

  #599·mani6409 opened Mar 10, 2026·

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• Fix crash when no cell candidates are detected

  #595·tanishaa7 opened Feb 28, 2026·

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• Vectorize numpy operations in structure splitting

  #592·aymuos15 opened Feb 19, 2026Contributor·4 of 5 tasks·

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