Add persistent fit results and project-centric workflows - #178

Merged

AndrewSazonov merged 72 commits into

May 19, 2026

Commits on May 18, 2026

Split persistence ADR and add fit output ADR
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1a02090
Add artifact root for reproducible tutorials
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394158b
Finalize Project facade decision
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c40b015
Store auto rendering defaults in project config
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e2d64b7
Accept loop category key identity ADR
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1dabc44
Add project save to ed-2 tutorial
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68a8057
Remove extraneous blank line
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d039633
Add project fit verbosity category
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d5770f0
Add analysis fit state implementation plan
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c2d36f0
Reformat documentation tables and line breaks
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527e018
Add project fit verbosity verification
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daa31f1
Clarify analysis fit-state ADR schema
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fa1fac4
Add common analysis fit-state categories
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703a387
Add deterministic fit-result categories
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6368687
Add Bayesian fit-result metadata categories
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4b656b8
Add Bayesian fit-cache manifest categories
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b28197c
Add project save step to tutorial
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5c8a251
Wire analysis fit-state CIF restore
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643061d
Linting and formatting
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723e260
Add h5py dependency
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c27e389
Capture persisted fit-state projections
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407389b
Persist Bayesian fit arrays in results sidecar
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386ccec
Restore fit results from saved analysis state
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7cf25bd
Align persisted fit-state schema with review feedback
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0de17d4
Persist Bayesian plot caches in sidecar
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6020753
Add integer type and skip redundant processing
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09186c1
Update tutorial notebooks with consistent IDs and saves
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9cef32a
Add pre/post-processing tracking to Bayesian fits
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6fda12f
Add project-first CLI commands for saved projects
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9a13a28
Fix missing pre-processing row in DREAM progress table
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970ef96
Add CLI commands for example data downloads
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3b59134
Remove pattern display from tutorial
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b99a719
Group saved-project tutorials under Load Project
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72a0f9e
Consolidate download and extract in tutorials
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fec75c2
Refactor Bayesian fit-state manifest create APIs
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ef953f6
Remove deterministic parameter-result persistence
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9d0542c
Update data index reference and hash
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6e741ff
Consolidate saved project tutorials to download_data
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4814a59
Remove deterministic_parameter_results from docs
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dfe3f6c
Revise docs for CLI syntax and project loading
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d988410
Update undo command to show it's a placeholder
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18a69f2
Harden fit-state sidecar paths and finalize ADR
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c117a55
Reorder CLI command definitions
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0ae7d57
Restore saved DREAM sampler settings on project load
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9671b86
Restore legacy DREAM sampler settings before CLI fit
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d1c7f97
Clarify DREAM multiprocessing issue for direct scripts
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bbd4bd6
Update data index ref and hash
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e37e2de
Add DREAM multiprocessing issue #95
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4b4826d
Remove obsolete package references from docs
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265752e
Update CIF serializer test for long descriptions
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ba32f26

Commits on May 19, 2026

Update ADR suggestions for implemented fit-state work
AndrewSazonov
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8176617
Accept parameter correlation persistence ADR
AndrewSazonov
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e828edc
Rename sequential fit result CSV columns
AndrewSazonov
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a850eea
Add overwrite option to Project.save_as
AndrewSazonov
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a573b6b
Improve code formatting and docstrings
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2f12067
Update data index reference and hash
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de92f6e
Simplify tutorial with API shortcuts
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33456bf
Improve tutorial index descriptions
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4dc0a1b
Accept str or list for column_names
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e796e6e
Fix fit tracking finalization cleanup
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7b078fd
Add tutorial benchmark runner and pixi task
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37fc390
Write benchmark results incrementally
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a7b7016
Reduce tutorial computation time and fix data ID
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d2d35c4
Simplify tutorial titles for consistency
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d809c04
Honor max_iterations in BUMPS fits
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b8c9122
Add tutorial benchmark results
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60359ac
Refactor BumpsMinimizer evaluation limit handling
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cec16f6
Plot fit quality vs temperature
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10f206c
Improve output formatting and add logging
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e7247b3
Optimize tutorial execution time
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f220fcb
Add newline before saved path
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dda5c94
Remove notebook timeout, add CI artifact root
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208a3e7