New Logs/Plots when B files generation

[CKermabon]

Branch to compare with locodox_Matlab and modify BcorrFiles generation to add logs and plots/figures by using GM's strategy for logs/plots
In this PR, we also modified the code to process float without InWater Data (like WMO 7902279)
and we modified facade.py for the plot Sprof vs Rtraj In-Air and In-Water T/S data.

[codecov]

❌ 1 Tests Failed:

Tests completed	Failed	Passed	Skipped
55	1	54	1

View the full list of 1 ❄️ flaky test(s)

test_config.py::TestResetParams::test_All

Flake rate in main: 100.00% (Passed 0 times, Failed 1 times)

Stack Traces | 0.021s run time

self = <pydox.tests.test_config.TestResetParams object at 0x7fbceafa1a10>
base_config = {'argo': {'qcflags': {'doxy': [1, 2, 8, 3], 'pres': [1, 2, 8], 'psal': [1, 2, 8], 'temp': [1, 2, 8]}, 'src': 'http://world'}, 'name': 'My dummy configuration', 'version': '0.1'}

    def test_All(self, base_config):
        """Test reset to ALL values from reference settings"""
        # Modify the base config:
        x = base_config.copy()
        set_params("name", "Hello World", config=x)
>       set_params("argo.src", "http://world", config=x)

pydox/tests/test_config.py:369: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
pydox/_config/config.py:514: in set_params
    ar.set_options(gdac=value)
../../...../pydox-dev/lib/python3.11............/site-packages/argopy/options.py:276: in __init__
    VALIDATE(k, v)
../../...../pydox-dev/lib/python3.11............/site-packages/argopy/options.py:146: in VALIDATE
    if not _VALIDATORS[key](val):
           ^^^^^^^^^^^^^^^^^^^^^
../../...../pydox-dev/lib/python3.11............/site-packages/argopy/options.py:90: in validate_gdac
    return check_gdac_option(this_path, errors="raise")
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

path = 'http://world', errors = 'raise', ignore_knowns = True

    def check_gdac_option(
        path, errors: str = "ignore", ignore_knowns: bool = True
    ):  # noqa: C901
        """Check if a path has the expected GDAC structure
    
        Expected GDAC structure::
    
            .
            └── dac
                ├── aoml
                ├── ...
                ├── coriolis
                ├── ...
                ├── meds
                └── nmdis
    
        Examples::
    
        >>> check_gdac_path("https://data-argo.ifremer.fr")  # True
        >>> check_gdac_path("https://usgodae..../pub/outgoing/argo") # True
        >>> check_gdac_path("ftp://ftp.ifremer.fr/ifremer/argo") # True
        >>> check_gdac_path(".../home/ref-argo/gdac") # True
        >>> check_gdac_path("s3:.../argo-gdac-sandbox/pub") # True
    
        >>> check_gdac_path("https://www.ifremer.fr") # False
        >>> check_gdac_path("ftp://usgodae.org/pub/outgoing") # False
    
        Parameters
        ----------
        path: str
            Path name to check, including access protocol
        errors: str, default="ignore"
            Determine how check procedure error are handled: "ignore", "raise" or "warn"
        ignore_knowns: bool, default=False
            Should the checking procedure be by-passed for the internal list of known GDACs.
            Set this to True to check if a known GDACs is connected or not.
    
        Returns
        -------
        checked: boolean
    
        See also
        --------
        :class:`argopy.stores.gdacfs`, :meth:`argopy.utils.list_gdac_servers`
    
        """
        from .utils import (
            list_gdac_servers,
        )  # import here, otherwise raises circular import
    
        if path in list_gdac_servers() and ignore_knowns:
            return True
        else:
    
            from .stores import gdacfs  # import here, otherwise raises circular import
    
            try:
                fs = gdacfs(path)
            except GdacPathError:
                if errors == "raise":
                    raise
                elif errors == "warn":
                    warnings.warn("Can't get address info (GAIerror) on '%s'" % path)
                    return False
                else:
                    return False
    
            check1 = fs.exists("dac")
            if check1:
                return True
    
            elif errors == "raise":
>               raise GdacPathError(
                    "This path is not GDAC compliant (no legitimate sub-folder `dac`):\n%s"
                    % path
                )
E               argopy.errors.GdacPathError: This path is not GDAC compliant (no legitimate sub-folder `dac`):
E               http://world

../../...../pydox-dev/lib/python3.11............/site-packages/argopy/options.py:384: GdacPathError

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[read-the-docs-community]

Documentation build overview

📚 pydox | 🛠️ Build #35018980 | 📁 Comparing 5d32dbf against latest (757bd56)

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2 files changed

± generated/pydox.params.html
± _modules/pydox/calibration/spec.html