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1. taxtriage taxtriage Public

   TaxTriage is a Nextflow workflow designed to agnostically identify and give confidences of microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with…

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2. Basestack Basestack Public archive

   Basestack is a platform for rapid and real time analysis of NGS data. It provides a executable application that connects standard bionformatics tools to a user interface. It is usable on all major …

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3. mytax mytax Public

   mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification

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4. DeepPaint DeepPaint Public

   A python package for exploration and classification of Cell Painting data.

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5. basestack_consensus basestack_consensus Public

   This repository is a Dockerized pipeline for creating consensus viral genomes from Oxford Nanopore data. This pipeline leverages the ARTIC Network bioinformatics pipeline and couples many annotatio…

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6. microbert microbert Public

   Leveraging Language Models for Analysis of Metagenomic Sequencing Data

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