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Achievement: Starstruckx2Achievement: Pull Sharkx2Achievement: Pair Extraordinaire

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josephrich98/README.md

Joseph Rich 🥼🖥️🩻🧬

MD/PhD trainee at USC and Caltech working at the intersection of computational biology, radiology, and artificial intelligence.

My interests include multimodal AI, theory and methods for radiogenomics, and open-source software for academia. I plan to become a radiologist-scientist building useful AI for medicine.

🌐 joseph-rich.com
📚 Google Scholar

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  1. scverse/gget scverse/gget Public

    🧬 gget enables efficient querying of genomic reference databases

    Python 1.2k 99

  2. pachterlab/paperpush pachterlab/paperpush Public

    📝 Automated manuscript validation and submission portal completion

    Python 206 8

  3. pachterlab/fastQpick pachterlab/fastQpick Public

    ⛏️ Bootstrapping of genomics read data for statistical analysis

    Python 33

  4. pachterlab/wompwomp pachterlab/wompwomp Public

    🌈 Alluvial plot untangling

    R 33 1

  5. pachterlab/cellsweep pachterlab/cellsweep Public

    🧹 Remove technical noise from single-cell RNA sequencing count data with expectation-maximization

    Jupyter Notebook 28

  6. pachterlab/varseek pachterlab/varseek Public

    💥 k-mer based variant calling and genotyping — sensitive, fast, and easy to use

    Python 21 1