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@molgenis

MOLGENIS - open source solutions for scientific data

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  1. molgenis-emx2 molgenis-emx2 Public

    MOLGENIS EMX2, the latest version of the MOLGENIS data platform.

    Java 26 27

  2. molgenis-service-armadillo molgenis-service-armadillo Public

    Armadillo; a DataSHIELD implementation, part of the MOLGENIS suite

    Java 11 11

  3. systemsgenetics systemsgenetics Public

    Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool

    Java 184 99

  4. vip vip Public

    Variant Interpretation Pipeline

    Shell 51 9

  5. molgenis molgenis Public

    MOLGENIS - for scientific data: management, exploration, integration and analysis.

    Java 122 96

Repositories

Showing 10 of 208 repositories
  • molgenis-emx2 Public

    MOLGENIS EMX2, the latest version of the MOLGENIS data platform.

    molgenis/molgenis-emx2's past year of commit activity
    Java 26 LGPL-3.0 27 330 (3 issues need help) 103 Updated Sep 14, 2026
  • take-it-easyconfigs Public
    molgenis/take-it-easyconfigs's past year of commit activity
    Perl 0 9 0 9 Updated Sep 14, 2026
  • cluster-utils Public

    Collection of utilities / helper scripts to make life easier on our HPC clusters.

    molgenis/cluster-utils's past year of commit activity
    Perl 23 LGPL-3.0 9 0 0 Updated Sep 14, 2026
  • league-of-robots Public

    Code and configs for deploying (virtual) HPC clusters.

    molgenis/league-of-robots's past year of commit activity
    Shell 5 GPL-3.0 12 2 4 Updated Sep 14, 2026
  • vip-annotate Public

    Variant Call Format (VCF) file annotation

    molgenis/vip-annotate's past year of commit activity
    Java 0 LGPL-3.0 0 0 0 Updated Sep 14, 2026
  • PGx-pipeline Public

    Farmacogenetics pipeline

    molgenis/PGx-pipeline's past year of commit activity
    Shell 2 LGPL-3.0 4 0 0 Updated Sep 11, 2026
  • NGS_Automated Public
    molgenis/NGS_Automated's past year of commit activity
    Shell 4 LGPL-3.0 8 15 0 Updated Sep 11, 2026
  • molgenis-flwr-armadillo Public

    Python extentions to implement flower in Armadillo

    molgenis/molgenis-flwr-armadillo's past year of commit activity
    Python 0 0 0 6 Updated Sep 11, 2026
  • molgenis-service-armadillo Public

    Armadillo; a DataSHIELD implementation, part of the MOLGENIS suite

    molgenis/molgenis-service-armadillo's past year of commit activity
    Java 11 LGPL-3.0 11 48 11 Updated Sep 11, 2026
  • interAGt Public

    Interactive application for visualization of AlphaGenome variant effect predictions.

    molgenis/interAGt's past year of commit activity
    TypeScript 0 LGPL-3.0 1 0 3 Updated Sep 11, 2026
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