Repositories list

• ChimeraX

  Public
  Source code for molecular graphics program UCSF ChimeraX

  Python

  •

  Other

  •5151 forks in RBVI/ChimeraX•287287 stars in RBVI/ChimeraX•33 issues in RBVI/ChimeraX•44 pull requests in RBVI/ChimeraX•Updated Oct 27, 2026Oct 27, 2026

• boltz

  Public
  Boltz-1 installed by ChimeraX Boltz tool

  Python

  •

  MIT License

  •911911 forks in RBVI/boltz•00 stars in RBVI/boltz•00 issues in RBVI/boltz•11 pull request in RBVI/boltz•Updated Oct 22, 2026Oct 22, 2026

• stringApp

  Public
  Cytoscape interface to STRING and STITCH

  Java

  •

  BSD 2-Clause "Simplified" License

  •1111 forks in RBVI/stringApp•1111 stars in RBVI/stringApp•1111 issues in RBVI/stringApp•00 pull requests in RBVI/stringApp•Updated Oct 10, 2026Oct 10, 2026

• turnstile_wsgi

  Public
  WSGI middleware for Cloudflare Turnstile

  Python

  •00 forks in RBVI/turnstile_wsgi•00 stars in RBVI/turnstile_wsgi•00 issues in RBVI/turnstile_wsgi•00 pull requests in RBVI/turnstile_wsgi•Updated Oct 10, 2026Oct 10, 2026

• openfold-3

  Public
  A fully open source biomolecular structure prediction model based on AlphaFold3

  Python

  •

  Apache License 2.0

  •180180 forks in RBVI/openfold-3•00 stars in RBVI/openfold-3•00 issues in RBVI/openfold-3•00 pull requests in RBVI/openfold-3•Updated Oct 9, 2026Oct 9, 2026

• appstore

  Public
  Cytoscape App Store web application code

  Python

  •2525 forks in RBVI/appstore•00 stars in RBVI/appstore•00 issues in RBVI/appstore•00 pull requests in RBVI/appstore•Updated Oct 8, 2026Oct 8, 2026

• readcif

  Public
  A fast C++ CIF and mmCIF parser

  C++

  •

  Other

  •33 forks in RBVI/readcif•1111 stars in RBVI/readcif•00 issues in RBVI/readcif•00 pull requests in RBVI/readcif•Updated Jul 24, 2026Jul 24, 2026

• medical_imaging

  Public
  A ChimeraX bundle for medical imaging, intended for research purposes only

  Python

  •00 forks in RBVI/medical_imaging•00 stars in RBVI/medical_imaging•00 issues in RBVI/medical_imaging•00 pull requests in RBVI/medical_imaging•Updated May 28, 2026May 28, 2026

• chimerax-recipes

  Public
  Python

  •33 forks in RBVI/chimerax-recipes•1818 stars in RBVI/chimerax-recipes•00 issues in RBVI/chimerax-recipes•00 pull requests in RBVI/chimerax-recipes•Updated May 11, 2026May 11, 2026

• qtshim

  Public
  ChimeraX's Qt shim library

  Python

  •00 forks in RBVI/qtshim•00 stars in RBVI/qtshim•00 issues in RBVI/qtshim•00 pull requests in RBVI/qtshim•Updated Feb 7, 2026Feb 7, 2026

• duo_unix

  Public
  Duo two-factor authentication for Unix systems

  C

  •153153 forks in RBVI/duo_unix•00 stars in RBVI/duo_unix•00 issues in RBVI/duo_unix•00 pull requests in RBVI/duo_unix•Updated Dec 29, 2025Dec 29, 2025

• LookSee

  Public
  LookSee molecular viewer for Quest VR headsets

  C#

  •11 fork in RBVI/LookSee•33 stars in RBVI/LookSee•1111 issues in RBVI/LookSee•00 pull requests in RBVI/LookSee•Updated Oct 31, 2025Oct 31, 2025

• ColabFold

  Public
  Improvements to colabfold_search MSA calculation.

  Jupyter Notebook

  •

  MIT License

  •756756 forks in RBVI/ColabFold•11 star in RBVI/ColabFold•00 issues in RBVI/ColabFold•00 pull requests in RBVI/ColabFold•Updated Sep 21, 2025Sep 21, 2025

• ChimeraX-ScholAR

  Public
  Interface between ChimeraX and Schol-AR. Allows for creating and editing Schol-Ar projects and augmentations inside of ChimeraX.

  Python

  •11 fork in RBVI/ChimeraX-ScholAR•00 stars in RBVI/ChimeraX-ScholAR•00 issues in RBVI/ChimeraX-ScholAR•00 pull requests in RBVI/ChimeraX-ScholAR•Updated Nov 14, 2024Nov 14, 2024

• chemViz2

  Public
  Cheminformatics App for Cytoscape 3

  Java

  •44 forks in RBVI/chemViz2•77 stars in RBVI/chemViz2•66 issues in RBVI/chemViz2•22 pull requests in RBVI/chemViz2•Updated Nov 2, 2024Nov 2, 2024

• CyAnimator

  Public
  Key frame animation app for Cytoscape

  Java

  •22 forks in RBVI/CyAnimator•44 stars in RBVI/CyAnimator•33 issues in RBVI/CyAnimator•00 pull requests in RBVI/CyAnimator•Updated Oct 24, 2024Oct 24, 2024

• localizer

  Public
  Java

  •11 fork in RBVI/localizer•00 stars in RBVI/localizer•00 issues in RBVI/localizer•00 pull requests in RBVI/localizer•Updated Oct 24, 2024Oct 24, 2024

• ChimeraX-Bundle-Template-TOML

  Public template
  Makefile

  •11 fork in RBVI/ChimeraX-Bundle-Template-TOML•11 star in RBVI/ChimeraX-Bundle-Template-TOML•00 issues in RBVI/ChimeraX-Bundle-Template-TOML•00 pull requests in RBVI/ChimeraX-Bundle-Template-TOML•Updated Sep 28, 2024Sep 28, 2024

• dovecot-submission

  Public
  Limit access to mail submission port to dovecot users using firewalld

  Python

  •00 forks in RBVI/dovecot-submission•00 stars in RBVI/dovecot-submission•00 issues in RBVI/dovecot-submission•00 pull requests in RBVI/dovecot-submission•Updated Aug 30, 2024Aug 30, 2024

• SPOKEApp

  Public
  Cytoscape interface to SPOKE

  Java

  •00 forks in RBVI/SPOKEApp•00 stars in RBVI/SPOKEApp•00 issues in RBVI/SPOKEApp•00 pull requests in RBVI/SPOKEApp•Updated Jul 19, 2024Jul 19, 2024

• CyPlot

  Public
  Java

  •33 forks in RBVI/CyPlot•33 stars in RBVI/CyPlot•22 issues in RBVI/CyPlot•00 pull requests in RBVI/CyPlot•Updated Jun 5, 2024Jun 5, 2024

• scNetViz

  Public
  Single-Cell RNA Seq analysis and visualization package for Cytoscape

  Java

  •

  Apache License 2.0

  •66 forks in RBVI/scNetViz•66 stars in RBVI/scNetViz•1212 issues in RBVI/scNetViz•22 pull requests in RBVI/scNetViz•Updated May 3, 2024May 3, 2024

• ppeclient

  Public
  Python client for Proofpoint Essentials

  Makefile

  •00 forks in RBVI/ppeclient•00 stars in RBVI/ppeclient•00 issues in RBVI/ppeclient•00 pull requests in RBVI/ppeclient•Updated Aug 15, 2023Aug 15, 2023

• clusterMaker2

  Public
  Cytoscape 3 Clustering App

  Java

  •1414 forks in RBVI/clusterMaker2•99 stars in RBVI/clusterMaker2•88 issues in RBVI/clusterMaker2•33 pull requests in RBVI/clusterMaker2•Updated Jun 16, 2023Jun 16, 2023

• rainloop-webmail

  Public
  Simple, modern & fast web-based email client

  PHP

  •

  MIT License

  •1k1k forks in RBVI/rainloop-webmail•00 stars in RBVI/rainloop-webmail•00 issues in RBVI/rainloop-webmail•00 pull requests in RBVI/rainloop-webmail•Updated Mar 9, 2023Mar 9, 2023

• mapSourceAndTarget

  Public
  Java

  •11 fork in RBVI/mapSourceAndTarget•00 stars in RBVI/mapSourceAndTarget•00 issues in RBVI/mapSourceAndTarget•00 pull requests in RBVI/mapSourceAndTarget•Updated Jan 6, 2023Jan 6, 2023

• ChimeraX-Bundle-Template

  Public template
  A template repository for prospective bundle developers

  Makefile

  •11 fork in RBVI/ChimeraX-Bundle-Template•00 stars in RBVI/ChimeraX-Bundle-Template•00 issues in RBVI/ChimeraX-Bundle-Template•00 pull requests in RBVI/ChimeraX-Bundle-Template•Updated Oct 6, 2022Oct 6, 2022

• minrms

  Public
  A bioinformatics algorithm for generating sequence alignments from 3D structures

  bioinformaticsprotein-structuresequence-alignment+ 2

  bioinformaticsprotein-structuresequence-alignmentstructure-alignmentstructural-bioinformatics

  C++

  •

  Other

  •22 forks in RBVI/minrms•44 stars in RBVI/minrms•11 issue in RBVI/minrms•00 pull requests in RBVI/minrms•Updated Feb 22, 2022Feb 22, 2022

• clusterJob

  Public
  A sample implementation of the Cytoscape jobs-api that mocks up a remote cluster service.

  Java

  •11 fork in RBVI/clusterJob•11 star in RBVI/clusterJob•00 issues in RBVI/clusterJob•11 pull request in RBVI/clusterJob•Updated Jun 4, 2021Jun 4, 2021

• structureVizX

  Public
  structureViz for ChimeraX

  Java

  •11 fork in RBVI/structureVizX•22 stars in RBVI/structureVizX•00 issues in RBVI/structureVizX•11 pull request in RBVI/structureVizX•Updated Jun 4, 2021Jun 4, 2021