Issues

• BAM files

  satijalab/Mixscale#22 · Filter by author carmenfilarsky-rx opened on Aug 28, 2026

• is.matrix(Y) || is(Y, "DelayedArray") is not TRUE

  satijalab/Mixscale#21 · Filter by author DrLucyMac opened on Mar 3, 2026
  1

• Run_wmvRegDE output and GSEA

  satijalab/Mixscale#20 · Filter by author victorjima opened on Feb 6, 2026
  1

• ERROR: Mixscale uses defunct "slot" object

  satijalab/Mixscale#19 · Filter by author ldrepano opened on Dec 14, 2025
  3

• Does Mixscale handle overlapping state distributions between perturbed and control cells?

  satijalab/Mixscale#17 · Filter by author caodudu opened on May 24, 2025

• Run_wmvRegDE error

  satijalab/Mixscale#16 · Filter by author Abigail1l1l1l opened on May 20, 2025
  4

• CalcPerturbSig error: Warning: Layer counts isn't present in the assay object

  satijalab/Mixscale#15 · Filter by author nyuhic opened on Mar 13, 2025
  3

• Run_wmvRegDE logfc.threshold

  satijalab/Mixscale#14 · Filter by author Newloong-Wang opened on Mar 7, 2025
  6

• Should FindVariableFeatures(), ScaleData(), and RunPCA() be run on PRTB assay before RunMixscale()?

  satijalab/Mixscale#13 · Filter by author Newloong-Wang opened on Mar 5, 2025
  2

• Python version of Mixscale? Custom DEGs input question

  satijalab/Mixscale#12 · Filter by author reetm09 opened on Mar 5, 2025
  1

• Retrieving mixscale scores for NT cells

  satijalab/Mixscale#11 · Filter by author robinfallegger opened on Nov 27, 2024
  1

• Why does Mixscale use raw counts for differential expression analysis instead of corrected data?

  satijalab/Mixscale#10 · Filter by author caodudu opened on Oct 2, 2024
  1

• Expression Level of Target and Perturbation Scores Positively Correlated?

  satijalab/Mixscale#9 · Filter by author MujeebQadiri opened on Sep 3, 2024
  5

• Error in CalcPerturbSig

  satijalab/Mixscale#7 · Filter by author Saharprh opened on Apr 10, 2024
  5

• Edge case where all perturbations are NP

  satijalab/Mixscale#5 · Filter by author chriswzou opened on Feb 26, 2024
  1

• "Gene" as default label in the output Tool

  satijalab/Mixscale#4 · Filter by author chriswzou opened on Feb 24, 2024
  1

• Missing decomposition vignette

  satijalab/Mixscale#3 · Filter by author oir068381 opened on Feb 18, 2024
  2

• Run_wmvRegDE error. The design matrix contains 'NA's for sample . Please remove them before you call 'glm_gp()'

  satijalab/Mixscale#2 · Filter by author gighuarhguggg45 opened on Feb 9, 2024
  4