ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
See wiki for details (https://github.com/tangerzhang/ALLHiC/wiki).
Please be aware that ALLHiC is no longer maintained. We recommend using two recently released algorithm packages developed by our team, which are reference-free and much faster:
- C-Phasing: C-Phasing GitHub Repository
- HapHiC: HapHiC GitHub Repository